![]() ![]() You can select an output file format, and then use the Add Macro Code drop-down to generate a macro with the desired functionality. The SANJ macro developed in this study automatically defines the areas of cell colonies grown in suspension, which are imaged using a phase contrast microscope the macro generates numerical data corresponding to the area of the colony in relation to the whole image. This will open a dialog (below) that will allow you to specify an input and output directory. The fastest way to start batch conversion is via the Process › Batch › Macro. All the internal functions and their descriptions can be found here. Simply set macro type to JavaScript, record commands, create script. The built-in macro functions within ImageJ are not limited to the ones above- there are an abundance of functions for dealing with arrays, filtering images, creating user inputs, file navigation, and so on.
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